Alright guys, I couldn't figure out a fix for the color scheme, but I decided to just make altered copies of the SV file, all the others color properly so no replacements for them were needed. On a side note, to make the wings show in the portrait, you'll have to add it in a layer behind the character portrait by using a program such as Gimp or Photoshop.
Basically what I did was change the hue/saturation and color values to fit new colors on the SV file for both male and female. Now they are available in blue, red, and yellow. All you have to do is copy the files in those colored folders to the SV section of the main generator folder and it will show as those colors in the generator in MV. A basic fix, but it's all I can do at this point.
As this is also the final pass, I will not be updating this set of wings anymore, but I will be adding in 3 more sets minimal to add an even bigger variety to choose from (hopefully those will work from the start, but if not I'll add the color variations from the start!) But hey, if you guys can figure out what's wrong with it and fix it, simply lemme know and I'll make the change, but I and several others can't figure it out.
Enjoy!